casacore
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Class for a table as a view of another table. More...
#include <RefTable.h>
Public Member Functions | |
RefTable (BaseTable *, Bool rowOrder, rownr_t initialNrrow) | |
Create a reference table object referencing the given BaseTable object. More... | |
RefTable (BaseTable *, const Vector< rownr_t > &rowNumbers) | |
A RefTable with the given row numbers is constructed. More... | |
RefTable (BaseTable *, const Vector< Bool > &rowMask) | |
Create a reference table object out of a mask. More... | |
RefTable (BaseTable *, const Vector< String > &columnNames) | |
Create a reference table object via projection (i.e. More... | |
RefTable (AipsIO &, const String &name, rownr_t nrrow, int option, const TableLock &lockOptions, const TSMOption &tsmOption) | |
Create a reference table out of a file (written by writeRefTable). More... | |
virtual | ~RefTable () |
The destructor flushes (i.e. More... | |
virtual void | reopenRW () |
Try to reopen the table (the underlying one) for read/write access. More... | |
virtual Bool | asBigEndian () const |
Is the table stored in big or little endian format? More... | |
virtual const StorageOption & | storageOption () const |
Get the storage option used for the table. More... | |
virtual Bool | isMultiUsed (Bool checkSubTable) const |
Is the table in use (i.e. More... | |
virtual const TableLock & | lockOptions () const |
Get the locking info. More... | |
virtual void | mergeLock (const TableLock &lockOptions) |
Merge the given lock info with the existing one. More... | |
virtual Bool | hasLock (FileLocker::LockType) const |
Has this process the read or write lock, thus can the table be read or written safely? More... | |
virtual Bool | lock (FileLocker::LockType, uInt nattempts) |
Try to lock the table for read or write access. More... | |
virtual void | unlock () |
Unlock the table. More... | |
virtual void | flush (Bool fsync, Bool recursive) |
Flush the table, i.e. More... | |
virtual void | resync () |
Resync the Table object with the table file. More... | |
virtual uInt | getModifyCounter () const |
Get the modify counter. More... | |
virtual Bool | isWritable () const |
Test if the parent table is opened as writable. More... | |
void | getRef (AipsIO &, int option, const TableLock &lockOptions, const TSMOption &tsmOption) |
Read a reference table from a file. More... | |
virtual void | copy (const String &newName, int tableOption) const |
This is doing a shallow copy. More... | |
virtual void | deepCopy (const String &newName, const Record &dataManagerInfo, const StorageOption &, int tableOption, Bool, int endianFormat, Bool noRows) const |
Copy the table and all its subtables. More... | |
virtual int | tableType () const |
It returns the type of the parent table. More... | |
virtual TableDesc | actualTableDesc () const |
Get the actual table description. More... | |
virtual Record | dataManagerInfo () const |
Get the data manager info. More... | |
virtual TableRecord & | keywordSet () |
Get readonly access to the table keyword set. More... | |
virtual TableRecord & | rwKeywordSet () |
Get read/write access to the table keyword set. More... | |
virtual BaseColumn * | getColumn (uInt columnIndex) const |
Get a column object using its index. More... | |
virtual BaseColumn * | getColumn (const String &columnName) const |
Get a column object using its name. More... | |
virtual Bool | canRemoveRow () const |
Test if it is possible to remove a row from this table. More... | |
virtual void | removeRow (rownr_t rownr) |
Remove the given row. More... | |
virtual void | removeAllRow () |
Remove the given row. More... | |
virtual void | addColumn (const ColumnDesc &columnDesc, Bool addToParent) |
Add one or more columns to the table. More... | |
virtual void | addColumn (const ColumnDesc &columnDesc, const String &dataManager, Bool byName, Bool addToParent) |
virtual void | addColumn (const ColumnDesc &columnDesc, const DataManager &dataManager, Bool addToParent) |
virtual void | addColumn (const TableDesc &tableDesc, const DataManager &dataManager, Bool addToParent) |
virtual Bool | canRemoveColumn (const Vector< String > &columnNames) const |
Test if columns can be removed (yes). More... | |
virtual void | removeColumn (const Vector< String > &columnNames) |
Remove columns. More... | |
virtual Bool | canRenameColumn (const String &columnName) const |
Test if a column can be renamed (yes). More... | |
virtual void | renameColumn (const String &newName, const String &oldName) |
Rename a column. More... | |
virtual void | renameHypercolumn (const String &newName, const String &oldName) |
Rename a hypercolumn. More... | |
virtual DataManager * | findDataManager (const String &name, Bool byColumn) const |
Find the data manager with the given name or for the given column. More... | |
virtual Vector< rownr_t > | rowNumbers () const |
Get a vector of row numbers. More... | |
virtual BaseTable * | root () |
Get parent of this table. More... | |
rownr_t | rootRownr (rownr_t rownr) const |
Get rownr in root table. More... | |
Vector< rownr_t > | rootRownr (const Vector< rownr_t > &rownrs) const |
Get vector of rownrs in root table. More... | |
virtual Bool | rowOrder () const |
Tell if the table is in row order. More... | |
virtual Vector< rownr_t > * | rowStorage () |
Get row number vector. More... | |
void | addRownr (rownr_t rownr) |
Add a rownr to reference table. More... | |
void | addRownrRange (rownr_t startRownr, rownr_t endRownr) |
void | setNrrow (rownr_t nrrow) |
Set the exact number of rows in the table. More... | |
virtual Bool | adjustRownrs (rownr_t nrrow, Vector< rownr_t > &rownrs, Bool determineOrder) const |
Adjust the row numbers to be the actual row numbers in the root table. More... | |
void | refAnd (rownr_t nr1, const rownr_t *rows1, rownr_t nr2, const rownr_t *rows2) |
And, or, subtract or xor the row numbers of 2 tables. More... | |
void | refOr (rownr_t nr1, const rownr_t *rows1, rownr_t nr2, const rownr_t *rows2) |
void | refSub (rownr_t nr1, const rownr_t *rows1, rownr_t nr2, const rownr_t *rows2) |
void | refXor (rownr_t nr1, const rownr_t *rows1, rownr_t nr2, const rownr_t *rows2) |
void | refNot (rownr_t nr1, const rownr_t *rows1, rownr_t nrmain) |
Public Member Functions inherited from casacore::BaseTable | |
BaseTable (const String &tableName, int tableOption, rownr_t nrrow) | |
Initialize the object. More... | |
BaseTable (MPI_Comm mpiComm, const String &tableName, int tableOption, rownr_t nrrow) | |
MPI version of the constructor. More... | |
void | BaseTableCommon (const String &tableName, int tableOption, rownr_t nrrow) |
Common code shared by the MPI constructor and non-MPI constructor. More... | |
virtual | ~BaseTable () |
void | link () |
Link to this BaseTable object (i.e. More... | |
virtual Bool | isNull () const |
Is the table a null table? By default it is not. More... | |
virtual void | setTableChanged () |
Set the table to being changed. More... | |
void | doNotWrite () |
Do not write the table (used in in case of exceptions). More... | |
Bool | isColumnWritable (const String &columnName) const |
Test if the given column is writable. More... | |
Bool | isColumnWritable (uInt columnIndex) const |
Bool | isColumnStored (const String &columnName) const |
Test if the given column is stored (otherwise it is virtual). More... | |
Bool | isColumnStored (uInt columnIndex) const |
const String & | tableName () const |
Get the table name. More... | |
virtual void | rename (const String &newName, int tableOption) |
Rename the table. More... | |
int | tableOption () const |
Get the table option. More... | |
void | markForDelete (Bool callback, const String &oldName) |
Mark the table for delete. More... | |
void | unmarkForDelete (Bool callback, const String &oldName) |
Unmark the table for delete. More... | |
Bool | isMarkedForDelete () const |
Test if the table is marked for delete. More... | |
const TableDesc & | tableDesc () const |
Get the table description. More... | |
void | showStructure (std::ostream &, Bool showDataMan, Bool showColumns, Bool showSubTables, Bool sortColumns, Bool cOrder) |
Show the table structure (implementation of Table::showStructure). More... | |
TableInfo & | tableInfo () |
Get access to the TableInfo object. More... | |
virtual void | flushTableInfo () |
Write the TableInfo object. More... | |
rownr_t | nrow () const |
Get number of rows. More... | |
virtual Bool | canAddRow () const |
Test if it is possible to add a row to this table. More... | |
virtual void | addRow (rownr_t nrrow=1, Bool initialize=True) |
Add one or more rows and possibly initialize them. More... | |
void | removeRow (const Vector< rownr_t > &rownrs) |
void | removeRow (const Vector< uInt > &rownrs) |
BaseTable * | select (const TableExprNode &, rownr_t maxRow, rownr_t offset) |
Select rows using the given expression (which can be null). More... | |
BaseTable * | select (rownr_t maxRow, rownr_t offset) |
Select maxRow rows and skip first offset rows. More... | |
BaseTable * | select (const Vector< rownr_t > &rownrs) |
Select rows using a vector of row numbers. More... | |
BaseTable * | select (const Block< Bool > &mask) |
Select rows using a mask block. More... | |
BaseTable * | project (const Block< String > &columnNames) |
Project the given columns (i.e. More... | |
BaseTable * | tabAnd (BaseTable *) |
Do logical operations on a table. More... | |
BaseTable * | tabOr (BaseTable *) |
union with another table More... | |
BaseTable * | tabSub (BaseTable *) |
subtract another table More... | |
BaseTable * | tabXor (BaseTable *) |
xor with another table More... | |
BaseTable * | tabNot () |
take complement More... | |
BaseTable * | sort (const Block< String > &columnNames, const Block< CountedPtr< BaseCompare > > &compareObjects, const Block< Int > &sortOrder, int sortOption, std::shared_ptr< Vector< rownr_t >> sortIterBoundaries=nullptr, std::shared_ptr< Vector< size_t >> sortIterKeyIdxChange=nullptr) |
Sort a table on one or more columns of scalars. More... | |
BaseTableIterator * | makeIterator (const Block< String > &columnNames, const Block< CountedPtr< BaseCompare > > &, const Block< Int > &orders, int option, bool cacheIterationBoundaries=false) |
Create an iterator. More... | |
void | addColumns (const TableDesc &tableDesc, const Record &dmInfo, Bool addToParent) |
Add one or more columns to the table. More... | |
Bool | checkRemoveColumn (const Vector< String > &columnNames, Bool throwException) const |
Check if the set of columns can be removed. More... | |
virtual BaseTable * | doSort (PtrBlock< BaseColumn * > &, const Block< CountedPtr< BaseCompare > > &, const Block< Int > &sortOrder, int sortOption, std::shared_ptr< Vector< rownr_t >> sortIterBoundaries, std::shared_ptr< Vector< size_t >> sortIterKeyIdxChange) |
Do the actual sort. More... | |
RefTable * | makeRefTable (Bool rowOrder, rownr_t initialNrrow) |
Create a RefTable object. More... | |
void | checkRowNumber (rownr_t rownr) const |
Check if the row number is valid. More... | |
int | traceId () const |
Get the table's trace-id. More... | |
Static Public Member Functions | |
static void | getLayout (TableDesc &desc, AipsIO &ios) |
Return the layout of a table (i.e. More... | |
static rownr_t * | getStorage (Vector< rownr_t > &rownrs) |
Get the internal pointer in a rowStorage vector. More... | |
Static Public Member Functions inherited from casacore::BaseTable | |
static void | unlink (BaseTable *) |
Unlink from a BaseTable. More... | |
static TableInfo | tableInfo (const String &tableName) |
Get the table info of the table with the given name. More... | |
Private Member Functions | |
RefTable (const RefTable &) | |
Copy constructor is forbidden, because copying a table requires some more knowledge (like table name of result). More... | |
RefTable & | operator= (const RefTable &) |
Assignment is forbidden, because copying a table requires some more knowledge (like table name of result). More... | |
virtual void | getPartNames (Block< String > &names, Bool recursive) const |
Get the names of the tables this table consists of. More... | |
void | showStructureExtra (std::ostream &) const |
Show the extra table structure info (name of root table). More... | |
void | setup (BaseTable *btp, const Vector< String > &columnNames) |
Setup the main parts of the object. More... | |
void | makeRefCol () |
Create the RefColumn objects for all columns in the description. More... | |
void | writeRefTable (Bool fsync) |
Write a reference table. More... | |
void | copyRefTable (const String &newName, int tableOption) |
Copy a RefTable that is not persistent. More... | |
Bool | checkAddColumn (const String &name, Bool addToParent) |
Check if a column can be added. More... | |
void | addRefCol (const ColumnDesc &cd) |
Add a column. More... | |
void | addRefCol (const TableDesc &tdesc) |
Add multiple columns. More... | |
Static Private Member Functions | |
static void | makeDesc (TableDesc &desc, const TableDesc &rootDesc, std::map< String, String > &nameMap, Vector< String > &names) |
Make a table description for the given columns. More... | |
Private Attributes | |
BaseTable * | baseTabPtr_p |
Bool | rowOrd_p |
Vector< rownr_t > | rowStorage_p |
rownr_t * | rows_p |
std::map< String, String > | nameMap_p |
std::map< String, RefColumn * > | colMap_p |
Bool | changed_p |
Additional Inherited Members | |
Protected Member Functions inherited from casacore::BaseTable | |
void | scratchCallback (Bool isScratch, const String &oldName) const |
Do the callback for scratch tables (if callback is set). More... | |
Bool | makeTableDir () |
Create the table directory when needed (and possible). More... | |
void | trueDeepCopy (const String &newName, const Record &dataManagerInfo, const StorageOption &, int tableOption, int endianFormat, Bool noRows) const |
Make a true deep copy of the table. More... | |
void | prepareCopyRename (const String &newName, int tableOption) const |
Prepare for copying or renaming a table. More... | |
virtual void | renameSubTables (const String &newName, const String &oldName) |
Rename the subtables (used by rename function). More... | |
void | throwIfTableExists () |
Check if the table already exists. More... | |
Bool | openedForWrite () const |
Test if the table is opened for write. More... | |
void | writeStart (AipsIO &, Bool bigEndian) |
Start writing a table. More... | |
void | writeEnd (AipsIO &) |
End writing a table. More... | |
Bool | shouldNotWrite () const |
Should the table be written. More... | |
void | getTableInfo () |
Read the TableInfo object. More... | |
Protected Attributes inherited from casacore::BaseTable | |
uInt | nrlink_p |
rownr_t | nrrow_p |
rownr_t | nrrowToAdd_p |
CountedPtr< TableDesc > | tdescPtr_p |
String | name_p |
int | option_p |
Bool | noWrite_p |
Bool | delete_p |
TableInfo | info_p |
Bool | madeDir_p |
int | itsTraceId |
Class for a table as a view of another table.
Internal
RefTable represents a table which is a view on another table, thus which references another table.
RefTable is used to make a view on another table. Usually it is a view on a subset of the table, either in vertical or horizontal direction. Thus a subset of rows and/or columns. It will be the result of a select, sort, project or iterate function.
It acts to the user as a normal table. All gets and puts are handled by RefColumn which directs them to the referenced column while (if needed) converting the given row number to the row number in the referenced table. For that purpose RefTable maintains a Vector of the row numbers in the referenced table.
The RefTable constructor acts in a way that it will always reference the original table. This means that if a select is done on a RefTable, the resulting RefTable will also reference the original PlainTable. This is done to avoid long chains of RefTables. However, if ever some other kind of table views are introduced (like a join or a concatenation of similar tables), this cannot be used anymore. Most software already anticipates on that. The only exception is the code anding, oring tables (refAnd, etc.).
Definition at line 104 of file RefTable.h.
Create a reference table object referencing the given BaseTable object.
If the BaseTable is actually another RefTable, it will reference its referenced table (thus the original table) and it will take its vector of row numbers and projected column names into account. Thus if a select is done on a projected table, the resulting RefTable will have the same projection.
Construct a RefTable with an empty row number vector. rowOrder=True indicates that the order of the rows will not be disturbed (as will be the case for a sort). A row number vector of the given size is initially allocated. Later this RefTable will be filled in by the select, etc..
A RefTable with the given row numbers is constructed.
Create a reference table object out of a mask.
The row number vector will consist of the rows for which the mask has a True value. The length of the mask must be the number of rows in the BaseTable.
Create a reference table object via projection (i.e.
column selection). The row number vector is a copy of the given table.
casacore::RefTable::RefTable | ( | AipsIO & | , |
const String & | name, | ||
rownr_t | nrrow, | ||
int | option, | ||
const TableLock & | lockOptions, | ||
const TSMOption & | tsmOption | ||
) |
Create a reference table out of a file (written by writeRefTable).
The referenced table will also be created (if not stored in the cache).
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The destructor flushes (i.e.
writes) the table if it is opened for output and not marked for delete.
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Copy constructor is forbidden, because copying a table requires some more knowledge (like table name of result).
Declaring it private, makes it unusable.
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Get the actual table description.
Implements casacore::BaseTable.
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Add one or more columns to the table.
The column is added to the parent table if told so and if not existing.
Reimplemented from casacore::BaseTable.
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Reimplemented from casacore::BaseTable.
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Reimplemented from casacore::BaseTable.
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Reimplemented from casacore::BaseTable.
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Add a column.
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Add multiple columns.
void casacore::RefTable::addRownr | ( | rownr_t | rownr | ) |
Add a rownr to reference table.
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Adjust the row numbers to be the actual row numbers in the root table.
This is, for instance, used when a RefTable is sorted. Optionally it also determines if the resulting rows are in row order.
Reimplemented from casacore::BaseTable.
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Is the table stored in big or little endian format?
Implements casacore::BaseTable.
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Test if columns can be removed (yes).
Implements casacore::BaseTable.
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Test if it is possible to remove a row from this table.
Reimplemented from casacore::BaseTable.
Test if a column can be renamed (yes).
Implements casacore::BaseTable.
Check if a column can be added.
Return True if it can and must be added to the parent table first.
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This is doing a shallow copy.
It gives an error if the RefTable has not been stored yet.
Reimplemented from casacore::BaseTable.
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Copy a RefTable that is not persistent.
It requires some special logic.
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Get the data manager info.
Implements casacore::BaseTable.
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Copy the table and all its subtables.
It copies the contents of each row to get a real copy.
Reimplemented from casacore::BaseTable.
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Find the data manager with the given name or for the given column.
Implements casacore::BaseTable.
Flush the table, i.e.
write it to disk. Nothing will be done if the table is not writable. A flush can be executed at any time. When a table is marked for delete, the destructor will remove files written by intermediate flushes. Note that if necessary the destructor will do an implicit flush, unless it is executed due to an exception.
Implements casacore::BaseTable.
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Get a column object using its index.
Implements casacore::BaseTable.
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Get a column object using its name.
Implements casacore::BaseTable.
Return the layout of a table (i.e.
description and #rows). This function has the advantage that only the minimal amount of information required is read from the table, thus it is much faster than a normal table open.
The number of rows is returned. The description of the table is stored in desc (its contents will be overwritten).
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Get the modify counter.
Implements casacore::BaseTable.
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Get the names of the tables this table consists of.
Reimplemented from casacore::BaseTable.
void casacore::RefTable::getRef | ( | AipsIO & | , |
int | option, | ||
const TableLock & | lockOptions, | ||
const TSMOption & | tsmOption | ||
) |
Read a reference table from a file.
The referenced table will also be created (if not stored in the cache).
Get the internal pointer in a rowStorage vector.
It checks whether no copy is made of the data.
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Has this process the read or write lock, thus can the table be read or written safely?
Implements casacore::BaseTable.
Is the table in use (i.e.
open) in another process? It always returns False.
Implements casacore::BaseTable.
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Test if the parent table is opened as writable.
Implements casacore::BaseTable.
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Get readonly access to the table keyword set.
Implements casacore::BaseTable.
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Try to lock the table for read or write access.
Implements casacore::BaseTable.
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Get the locking info.
Implements casacore::BaseTable.
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Make a table description for the given columns.
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Create the RefColumn objects for all columns in the description.
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Merge the given lock info with the existing one.
Implements casacore::BaseTable.
Assignment is forbidden, because copying a table requires some more knowledge (like table name of result).
Declaring it private, makes it unusable.
void casacore::RefTable::refAnd | ( | rownr_t | nr1, |
const rownr_t * | rows1, | ||
rownr_t | nr2, | ||
const rownr_t * | rows2 | ||
) |
And, or, subtract or xor the row numbers of 2 tables.
void casacore::RefTable::refOr | ( | rownr_t | nr1, |
const rownr_t * | rows1, | ||
rownr_t | nr2, | ||
const rownr_t * | rows2 | ||
) |
void casacore::RefTable::refSub | ( | rownr_t | nr1, |
const rownr_t * | rows1, | ||
rownr_t | nr2, | ||
const rownr_t * | rows2 | ||
) |
void casacore::RefTable::refXor | ( | rownr_t | nr1, |
const rownr_t * | rows1, | ||
rownr_t | nr2, | ||
const rownr_t * | rows2 | ||
) |
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Remove the given row.
Remove columns.
Implements casacore::BaseTable.
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Remove the given row.
Reimplemented from casacore::BaseTable.
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Rename a column.
Implements casacore::BaseTable.
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Rename a hypercolumn.
Implements casacore::BaseTable.
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Try to reopen the table (the underlying one) for read/write access.
An exception is thrown if the table is not writable. Nothing is done if the table is already open for read/write.
Implements casacore::BaseTable.
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Resync the Table object with the table file.
Implements casacore::BaseTable.
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Get parent of this table.
Reimplemented from casacore::BaseTable.
Get rownr in root table.
This converts the given row number to the row number in the root table.
Definition at line 397 of file RefTable.h.
References rows_p.
Get vector of rownrs in root table.
This converts the given row numbers to row numbers in the root table.
Get a vector of row numbers.
Reimplemented from casacore::BaseTable.
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Tell if the table is in row order.
Reimplemented from casacore::BaseTable.
Get row number vector.
This is used by the BaseTable logic and sort routines.
Reimplemented from casacore::BaseTable.
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Get read/write access to the table keyword set.
This requires that the table is locked (or it gets locked when using AutoLocking mode).
Implements casacore::BaseTable.
void casacore::RefTable::setNrrow | ( | rownr_t | nrrow | ) |
Set the exact number of rows in the table.
An exception is thrown if more than current nrrow.
Setup the main parts of the object.
First create the name map (mapping column name in RefTable to the column in the original table). If the BaseTable is a RefTable, use its name map. Otherwise create the initial name map from the table description. A rename might change the map.
Create the RefColumn objects.
Create the initial TableInfo as a copy of the original BaseTable.
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Show the extra table structure info (name of root table).
Reimplemented from casacore::BaseTable.
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Get the storage option used for the table.
Implements casacore::BaseTable.
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It returns the type of the parent table.
Reimplemented from casacore::BaseTable.
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Unlock the table.
This will also synchronize the table data, thus force the data to be written to disk.
Implements casacore::BaseTable.
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Write a reference table.
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Definition at line 337 of file RefTable.h.
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Definition at line 343 of file RefTable.h.
Definition at line 342 of file RefTable.h.
Definition at line 341 of file RefTable.h.
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Definition at line 338 of file RefTable.h.
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Definition at line 340 of file RefTable.h.
Referenced by rootRownr().
Definition at line 339 of file RefTable.h.