Define an N-dimensional ellipsoidal region of interest. More...

#include <LCEllipsoid.h>

Inheritance diagram for casacore::LCEllipsoid:

Public Member Functions
	LCEllipsoid ()

	LCEllipsoid (const IPosition &center, Float radius, const IPosition &latticeShape)
	Construct an N-dimensional sphere with the given center and radius (in pixels). More...

	LCEllipsoid (const Vector< Float > &center, Float radius, const IPosition &latticeShape)
	Construct an N-dimensional sphere with the given center and radius (in pixels). More...

	LCEllipsoid (const Vector< Double > &center, Double radius, const IPosition &latticeShape)

	LCEllipsoid (const Vector< Float > &center, const Vector< Float > &radii, const IPosition &latticeShape)
	Construct an N-dimensional ellipsoid with the given center and radii (in pixels). More...

	LCEllipsoid (const Vector< Double > &center, const Vector< Double > &radii, const IPosition &latticeShape)

	LCEllipsoid (const Float xcenter, const Float ycenter, const Float majorAxis, const Float minorAxis, const Float theta, const IPosition &latticeShape)
	Construct a two dimensional ellipse with theta being the angle from the x-axis to the major axis of the ellipse in radians. More...

	LCEllipsoid (const LCEllipsoid &other)
	Copy constructor (reference semantics). More...

virtual	~LCEllipsoid ()

LCEllipsoid &	operator= (const LCEllipsoid &other)
	Assignment (copy semantics). More...

virtual Bool	operator== (const LCRegion &other) const
	Comparison. More...

virtual LCRegion *	cloneRegion () const
	Make a copy of the derived object. More...

const Vector< Float > &	center () const
	Get the center. More...

const Vector< Float > &	radii () const
	Get the radii. More...

const Float &	theta () const
	Get the angle of the major axis of the ellipse relative to the x-axis 2-D only, throws exception if ellipse is not 2-D. More...

virtual String	type () const
	Get the region type. More...

virtual TableRecord	toRecord (const String &tableName) const
	Convert the (derived) object to a record. More...

Public Member Functions inherited from casacore::LCRegionFixed
	LCRegionFixed ()

	LCRegionFixed (const IPosition &latticeShape)
	Construct with the lattice shape only. More...

	LCRegionFixed (const LCRegionFixed &other)
	Copy constructor (copy semantics). More...

virtual	~LCRegionFixed ()
	Destructor. More...

const ArrayLattice< Bool > &	getMask () const
	Return the mask. More...

Public Member Functions inherited from casacore::LCRegionSingle
	LCRegionSingle ()

	LCRegionSingle (const IPosition &latticeShape)
	Construct with the lattice shape only. More...

	LCRegionSingle (const LCRegionSingle &other)
	Copy constructor (copy semantics). More...

virtual	~LCRegionSingle ()

virtual Bool	hasMask () const
	Does the region have a mask? More...

const Array< Bool >	maskArray () const
	Get the mask (as an array). More...

Bool	masksEqual (const LCRegion &other) const
	Is the mask of this region the same as the mask of the other. More...

virtual void	set (const Bool &value)
	The following "put" functions are described in detail in class Lattice. More...

virtual void	apply (Bool(*function)(Bool))
	Replace every element, x, of the Lattice with the result of f(x). More...

virtual void	apply (Bool(*function)(const Bool &))

virtual void	apply (const Functional< Bool, Bool > &function)

virtual void	putAt (const Bool &value, const IPosition &where)
	Put the value of a single element. More...

virtual void	copyData (const Lattice< Bool > &from)
	Copy the data from the given lattice to this one. More...

Public Member Functions inherited from casacore::LCRegion
	LCRegion ()

	LCRegion (const IPosition &latticeShape)
	Construct with the lattice shape only. More...

	LCRegion (const LCRegion &other)
	Copy constructor (copy semantics). More...

virtual	~LCRegion ()

Bool	operator!= (const LCRegion &other) const
	Non-equality. More...

virtual Lattice< Bool > *	clone () const
	Make a copy of the derived object. More...

virtual void	handleDelete ()
	Handle deletion of the region by deleting possible tables. More...

virtual void	handleRename (const String &newName, Bool overwrite)
	Handle renaming the region by renaming possible tables. More...

const String &	comment () const
	Get or set the comment. More...

void	setComment (const String &comment)

LCRegion *	translate (const IPosition &translateVector) const
	Construct another LCRegion (for e.g. More...

LCRegion *	translate (const IPosition &translateVector, const IPosition &newLatticeShape) const

LCRegion *	translate (const Vector< Float > &translateVector) const

LCRegion *	translate (const Vector< Float > &translateVector, const IPosition &newLatticeShape) const

const IPosition &	latticeShape () const
	Give the full lattice shape. More...

const Slicer &	boundingBox () const
	Give the bounding box. More...

Slicer	expand (const Slicer &slicer) const
	Expand a slicer or position in the region to the full lattice. More...

IPosition	expand (const IPosition &index) const

virtual uInt	ndim () const
	Return the dimensionality of the region. More...

virtual IPosition	shape () const
	Return the shape of the region (i.e. More...

virtual Bool	isWritable () const
	Usually the lattice (i.e. More...

Public Member Functions inherited from casacore::Lattice< Bool >
virtual	~Lattice ()
	a virtual destructor is needed so that it will use the actual destructor in the derived class More...

virtual DataType	dataType () const
	Get the data type of the lattice. More...

Bool	operator() (const IPosition &where) const
	Return the value of the single element located at the argument IPosition. More...

virtual Bool	getAt (const IPosition &where) const

Bool	get (COWPtr< Array< Bool > > &buffer, Bool removeDegenerateAxes=False) const
	Functions which extract an Array of values from a Lattice. More...

Bool	get (Array< Bool > &buffer, Bool removeDegenerateAxes=False)

Array< Bool >	get (Bool removeDegenerateAxes=False) const

Bool	getSlice (COWPtr< Array< Bool > > &buffer, const Slicer &section, Bool removeDegenerateAxes=False) const

Bool	getSlice (COWPtr< Array< Bool > > &buffer, const IPosition &start, const IPosition &shape, Bool removeDegenerateAxes=False) const

Bool	getSlice (COWPtr< Array< Bool > > &buffer, const IPosition &start, const IPosition &shape, const IPosition &stride, Bool removeDegenerateAxes=False) const

Bool	getSlice (Array< Bool > &buffer, const Slicer &section, Bool removeDegenerateAxes=False)

Bool	getSlice (Array< Bool > &buffer, const IPosition &start, const IPosition &shape, Bool removeDegenerateAxes=False)

Bool	getSlice (Array< Bool > &buffer, const IPosition &start, const IPosition &shape, const IPosition &stride, Bool removeDegenerateAxes=False)

Array< Bool >	getSlice (const Slicer &section, Bool removeDegenerateAxes=False) const

Array< Bool >	getSlice (const IPosition &start, const IPosition &shape, Bool removeDegenerateAxes=False) const

Array< Bool >	getSlice (const IPosition &start, const IPosition &shape, const IPosition &stride, Bool removeDegenerateAxes=False) const

void	putSlice (const Array< Bool > &sourceBuffer, const IPosition &where, const IPosition &stride)
	A function which places an Array of values within this instance of the Lattice at the location specified by the IPosition "where", incrementing by "stride". More...

void	putSlice (const Array< Bool > &sourceBuffer, const IPosition &where)

void	put (const Array< Bool > &sourceBuffer)

void	operator+= (const Lattice< Bool > &other)
	Add, subtract, multiple, or divide by another Lattice. More...

void	operator-= (const Lattice< Bool > &other)

void	operator*= (const Lattice< Bool > &other)

void	operator/= (const Lattice< Bool > &other)

virtual void	copyDataTo (Lattice< Bool > &to) const
	Copy the data from this lattice to the given lattice. More...

virtual uInt	advisedMaxPixels () const
	This function returns the advised maximum number of pixels to include in the cursor of an iterator. More...

Public Member Functions inherited from casacore::LatticeBase
virtual	~LatticeBase ()
	A virtual destructor is needed so that it will use the actual destructor in the derived class. More...

virtual String	imageType () const
	Get the image type (returns name of derived class). More...

virtual Bool	isPersistent () const
	Is the lattice persistent and can it be loaded by other processes as well? That is the case for a PagedArray or PagedImage and for an ImageExpr which does not use transient lattices or regions. More...

virtual Bool	isPaged () const
	Is the lattice paged to disk? The default implementation returns False. More...

virtual Bool	canReferenceArray () const
	Can the lattice data be referenced as an array section? That is the case for an ArrayLattice or a Temp/SubLattice using it. More...

virtual void	save (const String &fileName) const
	Save the image in an AipsIO file with the given name. More...

virtual Bool	lock (FileLocker::LockType, uInt nattempts)
	It is strongly recommended to use class LatticeLocker to handle lattice locking. More...

virtual void	unlock ()

virtual Bool	hasLock (FileLocker::LockType) const

virtual void	resync ()
	Resynchronize the Lattice object with the lattice file. More...

virtual void	flush ()
	Flush the data (but do not unlock). More...

virtual void	tempClose ()
	Temporarily close the lattice. More...

virtual void	reopen ()
	Explicitly reopen the temporarily closed lattice. More...

virtual String	name (Bool stripPath=False) const
	Return the name of the current Lattice object. More...

virtual size_t	nelements () const
	Return the total number of elements in this Lattice. More...

size_t	size () const

Bool	conform (const LatticeBase &other) const
	Return a value of "True" if this instance of Lattice and 'other' have the same shape, otherwise returns a value of "False". More...

virtual LELCoordinates	lelCoordinates () const
	Return the coordinates of the lattice. More...

IPosition	niceCursorShape (uInt maxPixels) const
	Returns a recommended cursor shape for iterating through all the pixels in the Lattice. More...

IPosition	niceCursorShape () const

virtual Bool	ok () const
	Check class internals - used for debugging. More...

virtual uInt	maximumCacheSize () const
	Maximum cache size - not necessarily all used. More...

virtual void	setMaximumCacheSize (uInt howManyPixels)
	Set the maximum (allowed) cache size as indicated. More...

virtual void	setCacheSizeInTiles (uInt howManyTiles)
	Set the actual cache size for this Array to be big enough for the indicated number of tiles. More...

virtual void	setCacheSizeFromPath (const IPosition &sliceShape, const IPosition &windowStart, const IPosition &windowLength, const IPosition &axisPath)
	Set the cache size as to "fit" the indicated path. More...

virtual void	clearCache ()
	Clears and frees up the caches, but the maximum allowed cache size is unchanged from when setCacheSize was called. More...

virtual void	showCacheStatistics (ostream &os) const
	Report on cache success. More...

Static Public Member Functions
static String	className ()
	Get the class name (to store in the record). More...

static LCEllipsoid *	fromRecord (const TableRecord &, const String &tableName)
	Convert correct object from a record. More...

Static Public Member Functions inherited from casacore::LCRegion
static LCRegion *	fromRecord (const TableRecord &, const String &tableName)
	Convert correct object from a record. More...

Protected Member Functions
virtual LCRegion *	doTranslate (const Vector< Float > &translateVector, const IPosition &newLatticeShape) const
	Construct another LCBox (for e.g. More...

Protected Member Functions inherited from casacore::LCRegionFixed
LCRegionFixed &	operator= (const LCRegionFixed &other)
	Assignment (copy semantics) is only useful for derived classes. More...

void	setMask (const Array< Bool > &mask)
	Set the mask. More...

Protected Member Functions inherited from casacore::LCRegionSingle
LCRegionSingle &	operator= (const LCRegionSingle &other)
	Assignment (copy semantics) is only useful for derived classes. More...

void	setMaskPtr (Lattice< Bool > &mask)
	Set the pointer to the mask in the derived class. More...

virtual Bool	doGetSlice (Array< Bool > &buffer, const Slicer &section)
	Do the actual getting of the mask. More...

virtual void	doPutSlice (const Array< Bool > &sourceBuffer, const IPosition &where, const IPosition &stride)
	Do the actual putting of the mask. More...

virtual IPosition	doNiceCursorShape (uInt maxPixels) const
	Get the best cursor shape. More...

virtual LatticeIterInterface < Bool > *	makeIter (const LatticeNavigator &navigator, Bool useRef) const
	Make an iterator. More...

Protected Member Functions inherited from casacore::LCRegion
LCRegion &	operator= (const LCRegion &other)
	Assignment (copy semantics) is only useful for derived classes. More...

void	setBoundingBox (const Slicer &boundingBox)
	Sometimes it is inconvenient for a derived class to set the bounding box in the constructor. More...

void	setShapeAndBoundingBox (const IPosition &latticeShape, const Slicer &boundingBox)

void	defineRecordFields (RecordInterface &record, const String &className) const
	Define the type and class name in the record. More...

Protected Member Functions inherited from casacore::Lattice< Bool >
	Lattice ()
	Define default constructor to satisfy compiler. More...

	Lattice (const Lattice< Bool > &)
	Copy constructor and assignment can only be used by derived classes. More...

virtual void	handleMath (const Lattice< Bool > &from, int oper)
	Handle the Math operators (+=, -=, *=, /=). More...

virtual void	handleMathTo (Lattice< Bool > &to, int oper) const

Lattice< Bool > &	operator= (const Lattice< Bool > &)

Protected Member Functions inherited from casacore::LatticeBase
	LatticeBase ()
	Define default constructor to be used by derived classes. More...

	LatticeBase (const LatticeBase &)
	Copy constructor and assignment can only be used by derived classes. More...

LatticeBase &	operator= (const LatticeBase &)

void	throwBoolMath () const
	Throw an exception for arithmetic on a Bool Lattice. More...

Private Member Functions
void	fillCenter (const IPosition &center)
	Fill the itsCenter vector from an IPosition. More...

Slicer	makeBox (const Vector< Float > &radii, const IPosition &latticeShape)
	Make the bounding box from center, radii, and shape. More...

void	defineMask ()
	Define the mask to indicate which elements are inside the ellipsoid. More...

void	_defineMask2D ()
	for 2-D ellipse with non-zero theta. More...

void	_doOutside ()
	set the mask in the case the center lies outside the lattice More...

Private Attributes
Vector< Float >	itsCenter

Vector< Float >	itsRadii

Vector< Float >	_epsilon
	small offset to guard against roundoff error More...

Float	_theta
	for 2-D case only More...

Bool	_centerIsInside
	is center inside the lattice? More...

Detailed Description

Define an N-dimensional ellipsoidal region of interest.

Intended use:

Public interface

Prerequisite

LCRegion

Synopsis

The LCEllipsoid class is a specialization of class LCRegion. It makes it possible to define an N-dimensional ellipsoidal region of interest, which includes the border. A separate constructor exists to define the special case of an N-dimensional sphere.
The center and the radii of the ellipsoid do not need to be pixel aligned. The center of the ellipsoid may be outside the lattice. The current implementation only supports ellipsoids with axes parallel to the lattice axes except in the case of a 2-D ellipse for which a constructor is provided for specifying the angle between the x-axis and major axis of the ellipse.

It can only be used for a lattice of any dimensionality as long as the dimensionality of the (hyper-)ellipsoid matches the dimensionality of the lattice.

Example

To Do

Arguments to have ellipsoid axes not parallel to lattice axes for dimensions greater than 2. This is a nontrivial problem because of the complexity of the rotation matrices involved.

Definition at line 83 of file LCEllipsoid.h.

Constructor & Destructor Documentation

casacore::LCEllipsoid::LCEllipsoid ( )

casacore::LCEllipsoid::LCEllipsoid	(	const IPosition &	center,
		Float	radius,
		const IPosition &	latticeShape
	)

Construct an N-dimensional sphere with the given center and radius (in pixels).

The center is pixel-aligned.

casacore::LCEllipsoid::LCEllipsoid	(	const Vector< Float > &	center,
		Float	radius,
		const IPosition &	latticeShape
	)

Construct an N-dimensional sphere with the given center and radius (in pixels).

The center does not need to be pixel-aligned.

casacore::LCEllipsoid::LCEllipsoid	(	const Vector< Double > &	center,
		Double	radius,
		const IPosition &	latticeShape
	)

casacore::LCEllipsoid::LCEllipsoid	(	const Vector< Float > &	center,
		const Vector< Float > &	radii,
		const IPosition &	latticeShape
	)

Construct an N-dimensional ellipsoid with the given center and radii (in pixels).

The center does not need to be pixel-aligned. (the radii are half the length of the axes of the ellipsoid).

casacore::LCEllipsoid::LCEllipsoid	(	const Vector< Double > &	center,
		const Vector< Double > &	radii,
		const IPosition &	latticeShape
	)

casacore::LCEllipsoid::LCEllipsoid	(	const Float	xcenter,
		const Float	ycenter,
		const Float	majorAxis,
		const Float	minorAxis,
		const Float	theta,
		const IPosition &	latticeShape
	)

Construct a two dimensional ellipse with theta being the angle from the x-axis to the major axis of the ellipse in radians.

casacore::LCEllipsoid::LCEllipsoid ( const LCEllipsoid & other )

Copy constructor (reference semantics).

virtual casacore::LCEllipsoid::~LCEllipsoid ( )

virtual

Member Function Documentation

void casacore::LCEllipsoid::_defineMask2D ( )

private

for 2-D ellipse with non-zero theta.

Works for both cases center inside or outside the lattice.

void casacore::LCEllipsoid::_doOutside ( )

private

set the mask in the case the center lies outside the lattice

const Vector< Float > & casacore::LCEllipsoid::center ( ) const

inline

Get the center.

Definition at line 193 of file LCEllipsoid.h.

References itsCenter.

static String casacore::LCEllipsoid::className ( )

static

Get the class name (to store in the record).

virtual LCRegion* casacore::LCEllipsoid::cloneRegion ( ) const

virtual

Make a copy of the derived object.

Implements casacore::LCRegion.

void casacore::LCEllipsoid::defineMask ( )

private

Define the mask to indicate which elements are inside the ellipsoid.

virtual LCRegion* casacore::LCEllipsoid::doTranslate	(	const Vector< Float > &	translateVector,
		const IPosition &	newLatticeShape
	)		const

protectedvirtual

Construct another LCBox (for e.g.

another lattice) by moving this one. It recalculates the bounding box. A positive translation value indicates "to right".

Implements casacore::LCRegion.

void casacore::LCEllipsoid::fillCenter ( const IPosition & center )

private

Fill the itsCenter vector from an IPosition.

static LCEllipsoid* casacore::LCEllipsoid::fromRecord	(	const TableRecord &	,
		const String &	tableName
	)

static

Convert correct object from a record.

Slicer casacore::LCEllipsoid::makeBox	(	const Vector< Float > &	radii,
		const IPosition &	latticeShape
	)

private

Make the bounding box from center, radii, and shape.

LCEllipsoid& casacore::LCEllipsoid::operator= ( const LCEllipsoid & other )

Assignment (copy semantics).

virtual Bool casacore::LCEllipsoid::operator== ( const LCRegion & other ) const

virtual

Comparison.

Reimplemented from casacore::LCRegionFixed.

const Vector< Float > & casacore::LCEllipsoid::radii ( ) const

inline

Get the radii.

Definition at line 197 of file LCEllipsoid.h.

References itsRadii.

const Float& casacore::LCEllipsoid::theta ( ) const

Get the angle of the major axis of the ellipse relative to the x-axis 2-D only, throws exception if ellipse is not 2-D.

virtual TableRecord casacore::LCEllipsoid::toRecord ( const String & tableName ) const

virtual

Convert the (derived) object to a record.

Implements casacore::LCRegion.

virtual String casacore::LCEllipsoid::type ( ) const

virtual

Get the region type.

Returns className()

Implements casacore::LCRegion.

Member Data Documentation

Bool casacore::LCEllipsoid::_centerIsInside

private

is center inside the lattice?

Definition at line 189 of file LCEllipsoid.h.

Vector<Float> casacore::LCEllipsoid::_epsilon

private

small offset to guard against roundoff error

Definition at line 185 of file LCEllipsoid.h.

Float casacore::LCEllipsoid::_theta

private

for 2-D case only

Definition at line 187 of file LCEllipsoid.h.

Vector<Float> casacore::LCEllipsoid::itsCenter

private

Definition at line 182 of file LCEllipsoid.h.

Referenced by center().

Vector<Float> casacore::LCEllipsoid::itsRadii

private

Definition at line 183 of file LCEllipsoid.h.

Referenced by radii().

The documentation for this class was generated from the following file:

lattices/LRegions/LCEllipsoid.h

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Member Functions

Private Attributes

Detailed Description

Intended use:

Prerequisite

Synopsis

Example

To Do

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation