Abstract base class to define a region of interest in lattice coordinates. More...

#include <LCRegion.h>

Inheritance diagram for casacore::LCRegion:

Public Member Functions
	LCRegion ()

	LCRegion (const IPosition &latticeShape)
	Construct with the lattice shape only. More...

	LCRegion (const LCRegion &other)
	Copy constructor (copy semantics). More...

virtual	~LCRegion ()

virtual Bool	operator== (const LCRegion &other) const
	Equality. More...

Bool	operator!= (const LCRegion &other) const
	Non-equality. More...

virtual Lattice< Bool > *	clone () const
	Make a copy of the derived object. More...

virtual LCRegion *	cloneRegion () const =0

virtual void	handleDelete ()
	Handle deletion of the region by deleting possible tables. More...

virtual void	handleRename (const String &newName, Bool overwrite)
	Handle renaming the region by renaming possible tables. More...

virtual String	type () const =0
	Region type. More...

const String &	comment () const
	Get or set the comment. More...

void	setComment (const String &comment)

virtual Bool	hasMask () const =0
	Does the region have a mask? More...

LCRegion *	translate (const IPosition &translateVector) const
	Construct another LCRegion (for e.g. More...

LCRegion *	translate (const IPosition &translateVector, const IPosition &newLatticeShape) const

LCRegion *	translate (const Vector< Float > &translateVector) const

LCRegion *	translate (const Vector< Float > &translateVector, const IPosition &newLatticeShape) const

const IPosition &	latticeShape () const
	Give the full lattice shape. More...

const Slicer &	boundingBox () const
	Give the bounding box. More...

Slicer	expand (const Slicer &slicer) const
	Expand a slicer or position in the region to the full lattice. More...

IPosition	expand (const IPosition &index) const

virtual TableRecord	toRecord (const String &tableName) const =0
	Convert the (derived) object to a record. More...

virtual uInt	ndim () const
	Return the dimensionality of the region. More...

virtual IPosition	shape () const
	Return the shape of the region (i.e. More...

virtual Bool	isWritable () const
	Usually the lattice (i.e. More...

virtual void	doPutSlice (const Array< Bool > &sourceBuffer, const IPosition &where, const IPosition &stride)
	Regions can usually not be put; i.e. More...

virtual void	set (const Bool &value)
	Set all elements in the Lattice to the given value. More...

virtual void	apply (Bool(*function)(Bool))
	Replace every element, x, of the Lattice with the result of f(x). More...

virtual void	apply (Bool(*function)(const Bool &))

virtual void	apply (const Functional< Bool, Bool > &function)

virtual void	putAt (const Bool &value, const IPosition &where)
	Put the value of a single element. More...

virtual void	copyData (const Lattice< Bool > &from)
	Copy the data from the given lattice to this one. More...

Public Member Functions inherited from casacore::Lattice< Bool >
virtual	~Lattice ()
	a virtual destructor is needed so that it will use the actual destructor in the derived class More...

virtual DataType	dataType () const
	Get the data type of the lattice. More...

Bool	operator() (const IPosition &where) const
	Return the value of the single element located at the argument IPosition. More...

virtual Bool	getAt (const IPosition &where) const

Bool	get (COWPtr< Array< Bool > > &buffer, Bool removeDegenerateAxes=False) const
	Functions which extract an Array of values from a Lattice. More...

Bool	get (Array< Bool > &buffer, Bool removeDegenerateAxes=False)

Array< Bool >	get (Bool removeDegenerateAxes=False) const

Bool	getSlice (COWPtr< Array< Bool > > &buffer, const Slicer &section, Bool removeDegenerateAxes=False) const

Bool	getSlice (COWPtr< Array< Bool > > &buffer, const IPosition &start, const IPosition &shape, Bool removeDegenerateAxes=False) const

Bool	getSlice (COWPtr< Array< Bool > > &buffer, const IPosition &start, const IPosition &shape, const IPosition &stride, Bool removeDegenerateAxes=False) const

Bool	getSlice (Array< Bool > &buffer, const Slicer &section, Bool removeDegenerateAxes=False)

Bool	getSlice (Array< Bool > &buffer, const IPosition &start, const IPosition &shape, Bool removeDegenerateAxes=False)

Bool	getSlice (Array< Bool > &buffer, const IPosition &start, const IPosition &shape, const IPosition &stride, Bool removeDegenerateAxes=False)

Array< Bool >	getSlice (const Slicer &section, Bool removeDegenerateAxes=False) const

Array< Bool >	getSlice (const IPosition &start, const IPosition &shape, Bool removeDegenerateAxes=False) const

Array< Bool >	getSlice (const IPosition &start, const IPosition &shape, const IPosition &stride, Bool removeDegenerateAxes=False) const

void	putSlice (const Array< Bool > &sourceBuffer, const IPosition &where, const IPosition &stride)
	A function which places an Array of values within this instance of the Lattice at the location specified by the IPosition "where", incrementing by "stride". More...

void	putSlice (const Array< Bool > &sourceBuffer, const IPosition &where)

void	put (const Array< Bool > &sourceBuffer)

void	operator+= (const Lattice< Bool > &other)
	Add, subtract, multiple, or divide by another Lattice. More...

void	operator-= (const Lattice< Bool > &other)

void	operator*= (const Lattice< Bool > &other)

void	operator/= (const Lattice< Bool > &other)

virtual void	copyDataTo (Lattice< Bool > &to) const
	Copy the data from this lattice to the given lattice. More...

virtual uInt	advisedMaxPixels () const
	This function returns the advised maximum number of pixels to include in the cursor of an iterator. More...

virtual LatticeIterInterface < Bool > *	makeIter (const LatticeNavigator &navigator, Bool useRef) const
	These functions are used by the LatticeIterator class to generate an iterator of the correct type for a specified Lattice. More...

virtual Bool	doGetSlice (Array< Bool > &buffer, const Slicer &section)=0
	The functions (in the derived classes) doing the actual work. More...

Public Member Functions inherited from casacore::LatticeBase
virtual	~LatticeBase ()
	A virtual destructor is needed so that it will use the actual destructor in the derived class. More...

virtual String	imageType () const
	Get the image type (returns name of derived class). More...

virtual Bool	isPersistent () const
	Is the lattice persistent and can it be loaded by other processes as well? That is the case for a PagedArray or PagedImage and for an ImageExpr which does not use transient lattices or regions. More...

virtual Bool	isPaged () const
	Is the lattice paged to disk? The default implementation returns False. More...

virtual Bool	canReferenceArray () const
	Can the lattice data be referenced as an array section? That is the case for an ArrayLattice or a Temp/SubLattice using it. More...

virtual void	save (const String &fileName) const
	Save the image in an AipsIO file with the given name. More...

virtual Bool	lock (FileLocker::LockType, uInt nattempts)
	It is strongly recommended to use class LatticeLocker to handle lattice locking. More...

virtual void	unlock ()

virtual Bool	hasLock (FileLocker::LockType) const

virtual void	resync ()
	Resynchronize the Lattice object with the lattice file. More...

virtual void	flush ()
	Flush the data (but do not unlock). More...

virtual void	tempClose ()
	Temporarily close the lattice. More...

virtual void	reopen ()
	Explicitly reopen the temporarily closed lattice. More...

virtual String	name (Bool stripPath=False) const
	Return the name of the current Lattice object. More...

virtual size_t	nelements () const
	Return the total number of elements in this Lattice. More...

size_t	size () const

Bool	conform (const LatticeBase &other) const
	Return a value of "True" if this instance of Lattice and 'other' have the same shape, otherwise returns a value of "False". More...

virtual LELCoordinates	lelCoordinates () const
	Return the coordinates of the lattice. More...

IPosition	niceCursorShape (uInt maxPixels) const
	Returns a recommended cursor shape for iterating through all the pixels in the Lattice. More...

IPosition	niceCursorShape () const

virtual Bool	ok () const
	Check class internals - used for debugging. More...

virtual IPosition	doNiceCursorShape (uInt maxPixels) const
	The function (in the derived classes) doing the actual work. More...

virtual uInt	maximumCacheSize () const
	Maximum cache size - not necessarily all used. More...

virtual void	setMaximumCacheSize (uInt howManyPixels)
	Set the maximum (allowed) cache size as indicated. More...

virtual void	setCacheSizeInTiles (uInt howManyTiles)
	Set the actual cache size for this Array to be big enough for the indicated number of tiles. More...

virtual void	setCacheSizeFromPath (const IPosition &sliceShape, const IPosition &windowStart, const IPosition &windowLength, const IPosition &axisPath)
	Set the cache size as to "fit" the indicated path. More...

virtual void	clearCache ()
	Clears and frees up the caches, but the maximum allowed cache size is unchanged from when setCacheSize was called. More...

virtual void	showCacheStatistics (ostream &os) const
	Report on cache success. More...

Static Public Member Functions
static LCRegion *	fromRecord (const TableRecord &, const String &tableName)
	Convert correct object from a record. More...

Protected Member Functions
LCRegion &	operator= (const LCRegion &other)
	Assignment (copy semantics) is only useful for derived classes. More...

void	setBoundingBox (const Slicer &boundingBox)
	Sometimes it is inconvenient for a derived class to set the bounding box in the constructor. More...

void	setShapeAndBoundingBox (const IPosition &latticeShape, const Slicer &boundingBox)

virtual LCRegion *	doTranslate (const Vector< Float > &translateVector, const IPosition &newLatticeShape) const =0
	Do the actual translate in a derived class. More...

void	defineRecordFields (RecordInterface &record, const String &className) const
	Define the type and class name in the record. More...

Protected Member Functions inherited from casacore::Lattice< Bool >
	Lattice ()
	Define default constructor to satisfy compiler. More...

	Lattice (const Lattice< Bool > &)
	Copy constructor and assignment can only be used by derived classes. More...

virtual void	handleMath (const Lattice< Bool > &from, int oper)
	Handle the Math operators (+=, -=, *=, /=). More...

virtual void	handleMathTo (Lattice< Bool > &to, int oper) const

Lattice< Bool > &	operator= (const Lattice< Bool > &)

Protected Member Functions inherited from casacore::LatticeBase
	LatticeBase ()
	Define default constructor to be used by derived classes. More...

	LatticeBase (const LatticeBase &)
	Copy constructor and assignment can only be used by derived classes. More...

LatticeBase &	operator= (const LatticeBase &)

void	throwBoolMath () const
	Throw an exception for arithmetic on a Bool Lattice. More...

Private Attributes
IPosition	itsShape

Slicer	itsBoundingBox

String	itsComment

Detailed Description

Abstract base class to define a region of interest in lattice coordinates.

Intended use:

Public interface

Prerequisite

Slicer

Synopsis

The LCRegion class is the abstract base class for various types of LCRegion's (e.g. LCEllipsoid, LCBox). It contains the minimal bounding box of the region and, if needed, a mask with the same shape as the bounding box. A mask element is true if the element is inside the box.

Each LCRegion object must be able to convert itself to and from a record. In that way they can be made persistent (in for example a Table).

The LCRegion can be used in several Lattices and Images classes and functions to limit the area to operate on.

Example

Motivation

The Slicer class is too limited as a region, because it can only describe a rectangular region. Specialized classes are needed to describe arbitrary regions. They need a base class to combine them.

Definition at line 87 of file LCRegion.h.

Constructor & Destructor Documentation

casacore::LCRegion::LCRegion ( )

casacore::LCRegion::LCRegion ( const IPosition & latticeShape )

Construct with the lattice shape only.

casacore::LCRegion::LCRegion ( const LCRegion & other )

Copy constructor (copy semantics).

virtual casacore::LCRegion::~LCRegion ( )

virtual

Member Function Documentation

virtual void casacore::LCRegion::apply ( Bool(*)(Bool) function )

virtual

Replace every element, x, of the Lattice with the result of f(x).

You must pass in the address of the function – so the function must be declared and defined in the scope of your program. All versions of apply require a function that accepts a single argument of type T (the Lattice template type) and return a result of the same type. The first apply expects a function with an argument passed by value; the second expects the argument to be passed by const reference; the third requires an instance of the class Functional<T,T>. The first form ought to run faster for the built-in types, which may be an issue for large Lattices stored in memory, where disk access is not an issue.

Reimplemented from casacore::Lattice< Bool >.

Reimplemented in casacore::LCRegionSingle.

virtual void casacore::LCRegion::apply ( Bool(*)(const Bool &) function )

virtual

Reimplemented from casacore::Lattice< Bool >.

Reimplemented in casacore::LCRegionSingle.

virtual void casacore::LCRegion::apply ( const Functional< Bool, Bool > & function )

virtual

Reimplemented from casacore::Lattice< Bool >.

Reimplemented in casacore::LCRegionSingle.

const Slicer & casacore::LCRegion::boundingBox ( ) const

inline

Give the bounding box.

Definition at line 227 of file LCRegion.h.

References itsBoundingBox.

virtual Lattice<Bool>* casacore::LCRegion::clone ( ) const

virtual

Make a copy of the derived object.

Implements casacore::Lattice< Bool >.

virtual LCRegion* casacore::LCRegion::cloneRegion ( ) const

pure virtual

Implemented in casacore::LCPolygon, casacore::LCEllipsoid, casacore::LCConcatenation, casacore::LCLELMask, casacore::LCMask, casacore::LCUnion, casacore::LCExtension, casacore::LCStretch, casacore::LCBox, casacore::LCIntersection, casacore::LCDifference, casacore::LCComplement, casacore::LCPagedMask, casacore::LCHDF5Mask, and casacore::LCPixelSet.

const String & casacore::LCRegion::comment ( ) const

inline

Get or set the comment.

Definition at line 244 of file LCRegion.h.

References itsComment.

Referenced by setComment().

virtual void casacore::LCRegion::copyData ( const Lattice< Bool > & from )

virtual

Copy the data from the given lattice to this one.

The default implementation uses function copyDataTo.

Reimplemented from casacore::Lattice< Bool >.

Reimplemented in casacore::LCRegionSingle.

void casacore::LCRegion::defineRecordFields	(	RecordInterface &	record,
		const String &	className
	)		const

protected

Define the type and class name in the record.

virtual void casacore::LCRegion::doPutSlice	(	const Array< Bool > &	sourceBuffer,
		const IPosition &	where,
		const IPosition &	stride
	)

virtual

Regions can usually not be put; i.e.

no putSlice, etc. can be done on their masks. Hence LCRegion throws by default an exception for the following functions.

Implements casacore::Lattice< Bool >.

Reimplemented in casacore::LCRegionSingle.

virtual LCRegion* casacore::LCRegion::doTranslate	(	const Vector< Float > &	translateVector,
		const IPosition &	newLatticeShape
	)		const

protectedpure virtual

Do the actual translate in a derived class.

Implemented in casacore::LCMask, casacore::LCPagedMask, casacore::LCEllipsoid, casacore::LCPolygon, casacore::LCConcatenation, casacore::LCLELMask, casacore::LCBox, casacore::LCExtension, casacore::LCStretch, casacore::LCUnion, casacore::LCHDF5Mask, casacore::LCIntersection, casacore::LCDifference, casacore::LCComplement, and casacore::LCPixelSet.

Slicer casacore::LCRegion::expand ( const Slicer & slicer ) const

Expand a slicer or position in the region to the full lattice.

This converts the positions in the region to positions in the entire lattice.

IPosition casacore::LCRegion::expand ( const IPosition & index ) const

static LCRegion* casacore::LCRegion::fromRecord	(	const TableRecord &	,
		const String &	tableName
	)

static

Convert correct object from a record.

virtual void casacore::LCRegion::handleDelete ( )

virtual

Handle deletion of the region by deleting possible tables.

The default implementation does nothing.

Reimplemented in casacore::LCPagedMask.

virtual void casacore::LCRegion::handleRename	(	const String &	newName,
		Bool	overwrite
	)

virtual

Handle renaming the region by renaming possible tables.

The default implementation does nothing.

Reimplemented in casacore::LCPagedMask.

virtual Bool casacore::LCRegion::hasMask ( ) const

pure virtual

Does the region have a mask?

Implemented in casacore::LCRegionMulti, and casacore::LCRegionSingle.

virtual Bool casacore::LCRegion::isWritable ( ) const

virtual

Usually the lattice (i.e.

the region mask) is not writable.

Reimplemented from casacore::LatticeBase.

Reimplemented in casacore::LCMask, casacore::LCPagedMask, and casacore::LCHDF5Mask.

const IPosition & casacore::LCRegion::latticeShape ( ) const

inline

Give the full lattice shape.

Definition at line 231 of file LCRegion.h.

References itsShape.

virtual uInt casacore::LCRegion::ndim ( ) const

virtual

Return the dimensionality of the region.

Reimplemented from casacore::LatticeBase.

Bool casacore::LCRegion::operator!= ( const LCRegion & other ) const

inline

Non-equality.

Watch out ! You must not, in the derived class structure, invoke LCRegion::operator!= If you do, you will be stuck in a time warp, as this will just fetch the operator== of the concrete class and you start all over again.

Be careful, do not use this anywhere in the derived class structure. You must use, e.g., if (! LCRegion::operator== (...)) rather than if (LCRegion::operator!= (...)) as the latter will invoke an infinite loop. It is ok to use when applying to a concrete class object.

You must use always use !LCRegionoperator==. It is ok in application code using the concrete class to say if (x != y) where x and y are, say, LCBoxes.

Definition at line 253 of file LCRegion.h.

LCRegion& casacore::LCRegion::operator= ( const LCRegion & other )

protected

Assignment (copy semantics) is only useful for derived classes.

virtual Bool casacore::LCRegion::operator== ( const LCRegion & other ) const

virtual

Equality.

Reimplemented in casacore::LCPolygon, casacore::LCEllipsoid, casacore::LCConcatenation, casacore::LCRegionMulti, casacore::LCLELMask, casacore::LCMask, casacore::LCUnion, casacore::LCExtension, casacore::LCStretch, casacore::LCBox, casacore::LCIntersection, casacore::LCRegionFixed, casacore::LCDifference, casacore::LCComplement, casacore::LCPagedMask, casacore::LCHDF5Mask, and casacore::LCPixelSet.

virtual void casacore::LCRegion::putAt	(	const Bool &	value,
		const IPosition &	where
	)

virtual

Put the value of a single element.

The default implementation uses putSlice.

Reimplemented from casacore::Lattice< Bool >.

Reimplemented in casacore::LCRegionSingle.

virtual void casacore::LCRegion::set ( const Bool & value )

virtual

Set all elements in the Lattice to the given value.

Reimplemented from casacore::Lattice< Bool >.

Reimplemented in casacore::LCRegionSingle.

void casacore::LCRegion::setBoundingBox ( const Slicer & boundingBox )

protected

Sometimes it is inconvenient for a derived class to set the bounding box in the constructor.

So it can be set explicitly. It fills in the possibly undefined Slicer values. It may even be needed to set the lattice shape.

void casacore::LCRegion::setComment ( const String & comment )

inline

Definition at line 248 of file LCRegion.h.

References comment(), and itsComment.

void casacore::LCRegion::setShapeAndBoundingBox	(	const IPosition &	latticeShape,
		const Slicer &	boundingBox
	)

protected

virtual IPosition casacore::LCRegion::shape ( ) const

virtual

Return the shape of the region (i.e.

of its bounding box).

Implements casacore::LatticeBase.

virtual TableRecord casacore::LCRegion::toRecord ( const String & tableName ) const

pure virtual

Convert the (derived) object to a record.

The record can be used to make the object persistent. The tableName argument can be used by derived classes (e.g. LCPagedMask) to put very large objects.

Implemented in casacore::LCMask, casacore::LCPagedMask, casacore::LCEllipsoid, casacore::LCPolygon, casacore::LCConcatenation, casacore::LCLELMask, casacore::LCExtension, casacore::LCStretch, casacore::LCUnion, casacore::LCBox, casacore::LCIntersection, casacore::LCHDF5Mask, casacore::LCDifference, casacore::LCComplement, and casacore::LCPixelSet.

LCRegion * casacore::LCRegion::translate ( const IPosition & translateVector ) const

inline

Construct another LCRegion (for e.g.

another lattice) by moving this one. It recalculates the bounding box and mask. A positive translation value indicates "to right".

Definition at line 235 of file LCRegion.h.

References itsShape.

Referenced by translate().

LCRegion* casacore::LCRegion::translate	(	const IPosition &	translateVector,
		const IPosition &	newLatticeShape
	)		const

LCRegion * casacore::LCRegion::translate ( const Vector< Float > & translateVector ) const

inline

Definition at line 239 of file LCRegion.h.

References itsShape, and translate().

LCRegion* casacore::LCRegion::translate	(	const Vector< Float > &	translateVector,
		const IPosition &	newLatticeShape
	)		const

virtual String casacore::LCRegion::type ( ) const

pure virtual

Region type.

Returns className() of derived class.

Implemented in casacore::LCMask, casacore::LCPagedMask, casacore::LCEllipsoid, casacore::LCPolygon, casacore::LCConcatenation, casacore::LCLELMask, casacore::LCExtension, casacore::LCStretch, casacore::LCUnion, casacore::LCBox, casacore::LCIntersection, casacore::LCHDF5Mask, casacore::LCDifference, casacore::LCComplement, and casacore::LCPixelSet.

Member Data Documentation

Slicer casacore::LCRegion::itsBoundingBox

private

Definition at line 222 of file LCRegion.h.

Referenced by boundingBox().

String casacore::LCRegion::itsComment

private

Definition at line 223 of file LCRegion.h.

Referenced by comment(), and setComment().

IPosition casacore::LCRegion::itsShape

private

Definition at line 221 of file LCRegion.h.

Referenced by latticeShape(), and translate().

The documentation for this class was generated from the following file:

lattices/LRegions/LCRegion.h

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Attributes

Detailed Description

Intended use:

Prerequisite

Synopsis

Example

Motivation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation